PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0445
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 350aa    MW: 39414.3 Da    PI: 8.9957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0445genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.64.9e-1623118286
     trihelix   2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                  Wt +e+++Liea++ + e+r++r+        k  + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k   ++++ s+ + + ++e
  Gh_D10G0445  23 WTVNETMVLIEAKEmDYERRMKRSgdhsegrnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKQRSYWEME 118
                  *************963333333322222222268899**************************************999843355666777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8761588IPR017877Myb-like domain
PfamPF138372.3E-1222118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR  60
WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN  120
ERKEKNLPSN MLRQIYDRLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF  180
QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIGSSDSDT  240
SEHSDSPAKR RRRGGGNGEG TSGTANNINE VSTAISRSAS IIAEAIQASE EREERRHRDL  300
LSFHERRLKI EESKTEINKK GMDGLVDAIN KLANSIFALA SHKNQSSAPK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.25470.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457270.10.0PREDICTED: protein enabled homolog isoform X1
RefseqXP_012457271.10.0PREDICTED: protein enabled homolog isoform X1
RefseqXP_012457272.10.0PREDICTED: protein enabled homolog isoform X1
TrEMBLA0A0D2RH280.0A0A0D2RH28_G
STRINGPOPTR_0012s11820.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-62Trihelix family protein